Chaste Release::3.1
SimplePetscNonlinearSolver.cpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
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00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
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00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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00033 
00034 */
00035 
00040 #include "SimplePetscNonlinearSolver.hpp"
00041 #include "Exception.hpp"
00042 #include "petscsnes.h"
00043 #include "PetscTools.hpp"
00044 #include <sstream>
00045 
00046 Vec SimplePetscNonlinearSolver::Solve(PetscErrorCode (*pComputeResidual)(SNES,Vec,Vec,void*),
00047                                       PetscErrorCode (*pComputeJacobian)(SNES,Vec,Mat*,Mat*,MatStructure*,void*),
00048                                       Vec initialGuess,
00049                                       unsigned fill,
00050                                       void* pContext)
00051 {
00052     SNES snes;
00053 
00054     // Create the residual vector by copying the structure of the initial guess
00055     Vec residual;
00056     VecDuplicate(initialGuess, &residual);
00057 
00058     Mat jacobian; // Jacobian Matrix
00059 
00060     PetscInt N; // number of elements
00061 
00062     // Get the size of the Jacobian from the residual
00063     VecGetSize(initialGuess,&N);
00064 
00065     PetscTools::SetupMat(jacobian, N, N, fill);
00066 
00067     SNESCreate(PETSC_COMM_WORLD, &snes);
00068     SNESSetFunction(snes, residual, pComputeResidual, pContext);
00069     SNESSetJacobian(snes, jacobian, jacobian, pComputeJacobian, pContext);
00070     SNESSetType(snes,SNESLS);
00071     SNESSetTolerances(snes,1.0e-5,1.0e-5,1.0e-5,PETSC_DEFAULT,PETSC_DEFAULT);
00072 
00073     // x is the iteration vector SNES uses when solving, set equal to initialGuess to start with
00074     Vec x;
00075     VecDuplicate(initialGuess, &x);
00076     VecCopy(initialGuess, x);
00077 
00078 #if (PETSC_VERSION_MAJOR == 2 && PETSC_VERSION_MINOR == 2) //PETSc 2.2
00079     SNESSolve(snes, x);
00080 #else
00081     SNESSolve(snes, PETSC_NULL, x);
00082 #endif
00083 
00084     PetscTools::Destroy(residual);
00085     PetscTools::Destroy(jacobian); // Free Jacobian
00086 
00087     SNESConvergedReason reason;
00088     SNESGetConvergedReason(snes,&reason);
00089 #define COVERAGE_IGNORE
00090     if (reason < 0)
00091     {
00092         std::stringstream reason_stream;
00093         reason_stream << reason;
00094         PetscTools::Destroy(x); // Since caller can't free the memory in this case
00095         SNESDestroy(PETSC_DESTROY_PARAM(snes));
00096         EXCEPTION("Nonlinear Solver did not converge. PETSc reason code:"
00097                   +reason_stream.str()+" .");
00098     }
00099 #undef COVERAGE_IGNORE
00100     SNESDestroy(PETSC_DESTROY_PARAM(snes));
00101 
00102     return x;
00103 }