Chaste Release::3.1
MonodomainAssembler.hpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
00014  * Redistributions of source code must retain the above copyright notice,
00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
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00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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00034 */
00035 
00036 #ifndef MONODOMAINASSEMBLER_HPP_
00037 #define MONODOMAINASSEMBLER_HPP_
00038 
00039 
00040 #include "AbstractCardiacFeVolumeIntegralAssembler.hpp"
00041 #include "MonodomainTissue.hpp"
00042 #include "MassMatrixAssembler.hpp"
00043 #include "MonodomainStiffnessMatrixAssembler.hpp"
00044 
00063 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00064 class MonodomainAssembler
00065    : public AbstractCardiacFeVolumeIntegralAssembler<ELEMENT_DIM,SPACE_DIM,1,false,true,CARDIAC>
00066 {
00067 protected:
00069     HeartConfig* mpConfig;
00070 
00073     MassMatrixAssembler<ELEMENT_DIM, SPACE_DIM> mMassMatrixAssembler;
00074 
00077     MonodomainStiffnessMatrixAssembler<ELEMENT_DIM, SPACE_DIM> mStiffnessMatrixAssembler;
00078 
00079 public:
00080 
00094     c_matrix<double,1*(ELEMENT_DIM+1),1*(ELEMENT_DIM+1)> ComputeMatrixTerm(
00095                 c_vector<double, ELEMENT_DIM+1> &rPhi,
00096                 c_matrix<double, SPACE_DIM, ELEMENT_DIM+1> &rGradPhi,
00097                 ChastePoint<SPACE_DIM> &rX,
00098                 c_vector<double,1> &rU,
00099                 c_matrix<double, 1, SPACE_DIM> &rGradU /* not used */,
00100                 Element<ELEMENT_DIM,SPACE_DIM>* pElement);
00101 
00102 
00110     MonodomainAssembler(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
00111                         MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* pTissue,
00112                         unsigned numQuadPoints = 2);
00113 };
00114 
00115 #endif /*MONODOMAINASSEMBLER_HPP_*/