Chaste Release::3.1
FibreReader.hpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
00014  * Redistributions of source code must retain the above copyright notice,
00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
00018    and/or other materials provided with the distribution.
00019  * Neither the name of the University of Oxford nor the names of its
00020    contributors may be used to endorse or promote products derived from this
00021    software without specific prior written permission.
00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00033 
00034 */
00035 
00036 #ifndef FIBREREADER_HPP_
00037 #define FIBREREADER_HPP_
00038 
00039 #include <string>
00040 #include <fstream>
00041 #include <vector>
00042 
00043 #include "UblasIncludes.hpp"
00044 #include "FileFinder.hpp"
00045 
00049 typedef enum FibreFileType_
00050 {
00051     AXISYM=0,
00052     ORTHO
00053 } FibreFileType;
00054 
00060 template<unsigned DIM>
00061 class FibreReader
00062 {
00063 private:
00065     std::ifstream mDataFile;
00066 
00068     std::string mFilePath;
00069 
00071     unsigned mNumLinesOfData;
00072 
00073     bool mFileIsBinary;  
00076     unsigned mNumItemsPerLine;
00077 
00079     unsigned mNextIndex;
00080 
00082     std::vector<double> mTokens;
00083 
00089     unsigned GetTokensAtNextLine();
00090 
00096     void ReadNumLinesOfDataFromFile();
00097 
00098 public:
00105     FibreReader(const FileFinder& rFileFinder, FibreFileType fibreFileType);
00106 
00110     ~FibreReader();
00111 
00112 
00133     void GetFibreSheetAndNormalMatrix(unsigned fibreIndex, c_matrix<double,DIM,DIM>& rFibreMatrix, bool checkOrthogonality=true);
00134 
00149     void GetFibreVector(unsigned fibreIndex, c_vector<double,DIM>& rFibreVector, bool checkNormalised=true);
00150 
00155     unsigned GetNumLinesOfData()
00156     {
00157         return mNumLinesOfData;
00158     }
00159 
00167     void GetAllAxi(std::vector< c_vector<double, DIM> >& direction);
00168 
00178     void GetAllOrtho(std::vector< c_vector<double, DIM> >& first_direction,
00179                          std::vector< c_vector<double, DIM> >& second_direction,
00180                          std::vector< c_vector<double, DIM> >& third_direction);
00181 
00182 };
00183 
00184 #endif /*FIBREREADER_HPP_*/