Chaste Release::3.1
AbstractMeshWriter.cpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
00014  * Redistributions of source code must retain the above copyright notice,
00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
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00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00033 
00034 */
00035 
00036 #include <cassert>
00037 #include "AbstractMeshWriter.hpp"
00038 #include "PetscTools.hpp"
00039 
00041 // Implementation
00043 
00044 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00045 AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::AbstractMeshWriter(const std::string &rDirectory,
00046                                                                const std::string &rBaseName,
00047                                                                const bool clearOutputDir)
00048     : mBaseName(rBaseName),
00049       mpMeshReader(NULL)
00050 {
00051     mpOutputFileHandler = new OutputFileHandler(rDirectory, clearOutputDir);
00052 }
00053 
00054 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00055 AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::~AbstractMeshWriter()
00056 {
00057     delete mpOutputFileHandler;
00058 }
00059 
00060 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00061 std::string AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetOutputDirectory()
00062 {
00063     return mpOutputFileHandler->GetOutputDirectoryFullPath();
00064 }
00065 
00066 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00067 unsigned AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNumNodes()
00068 {
00069     return mNumNodes;
00070 }
00071 
00072 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00073 unsigned AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNumElements()
00074 {
00075     return mNumElements;
00076 }
00077 
00078 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00079 unsigned AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNumBoundaryFaces()
00080 {
00081     return mNumBoundaryElements;
00082 }
00083 
00084 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00085 unsigned AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNumCableElements()
00086 {
00087     return mNumCableElements;
00088 }
00089 
00090 
00091 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00092 std::vector<double> AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNextNode()
00093 {
00094     assert(mpMeshReader!=NULL);
00095     return mpMeshReader->GetNextNode();
00096 }
00097 
00098 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00099 ElementData AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNextElement()
00100 {
00101     assert(mpMeshReader!=NULL);
00102     return mpMeshReader->GetNextElementData();
00103 }
00104 
00105 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00106 ElementData AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNextBoundaryElement()
00107 {
00108     assert(mpMeshReader!=NULL);
00109     return mpMeshReader->GetNextFaceData();
00110 }
00111 
00112 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00113 ElementData AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNextCableElement()
00114 {
00115     assert(mpMeshReader!=NULL);
00116     return mpMeshReader->GetNextCableElementData();
00117 }
00118 
00119 
00120 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00121 void AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::WriteFilesUsingMeshReader(
00122         AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>& rMeshReader)
00123 {
00124     mpMeshReader = &rMeshReader;
00125     mNumNodes = mpMeshReader->GetNumNodes();
00126     mNumElements = mpMeshReader->GetNumElements();
00127     mNumBoundaryElements = mpMeshReader->GetNumFaces();
00128 
00130     mNumCableElements = mpMeshReader->GetNumCableElements();
00131 
00132     if (PetscTools::AmMaster())
00133     {
00134         WriteFiles();
00135     }
00136 }
00137 
00139 // Explicit instantiation
00141 
00142 template class AbstractMeshWriter<1,1>;
00143 template class AbstractMeshWriter<1,2>;
00144 template class AbstractMeshWriter<1,3>;
00145 template class AbstractMeshWriter<2,2>;
00146 template class AbstractMeshWriter<2,3>;
00147 template class AbstractMeshWriter<3,3>;