Chaste Release::3.1
AbstractFeAssemblerCommon.hpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
00014  * Redistributions of source code must retain the above copyright notice,
00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
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00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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00033 
00034 */
00035 
00036 #ifndef ABSTRACTFEASSEMBLERCOMMON_HPP_
00037 #define ABSTRACTFEASSEMBLERCOMMON_HPP_
00038 
00039 #include "AbstractFeAssemblerInterface.hpp"
00040 #include "ReplicatableVector.hpp"
00041 #include "DistributedVector.hpp"
00042 #include "HeartEventHandler.hpp"
00043 #include "LinearBasisFunction.hpp"
00044 #include "PetscTools.hpp"
00045 #include "AbstractTetrahedralMesh.hpp"
00046 
00056 typedef enum InterpolationLevel_
00057 {
00058     CARDIAC = 0,
00059     NORMAL,
00060     NONLINEAR
00061 } InterpolationLevel;
00062 
00063 
00064 
00074 template <unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM, bool CAN_ASSEMBLE_VECTOR, bool CAN_ASSEMBLE_MATRIX, InterpolationLevel INTERPOLATION_LEVEL>
00075 class AbstractFeAssemblerCommon : public AbstractFeAssemblerInterface<CAN_ASSEMBLE_VECTOR,CAN_ASSEMBLE_MATRIX>
00076 {
00077 protected:
00082     ReplicatableVector mCurrentSolutionOrGuessReplicated;
00083 
00090     virtual double GetCurrentSolutionOrGuessValue(unsigned nodeIndex, unsigned indexOfUnknown)
00091     {
00092         return mCurrentSolutionOrGuessReplicated[ PROBLEM_DIM*nodeIndex + indexOfUnknown];
00093     }
00094 
00100     virtual void ResetInterpolatedQuantities()
00101     {}
00102 
00113     virtual void IncrementInterpolatedQuantities(double phiI, const Node<SPACE_DIM>* pNode)
00114     {}
00115 
00135     virtual void IncrementInterpolatedGradientQuantities(const c_matrix<double, SPACE_DIM, ELEMENT_DIM+1>& rGradPhi, unsigned phiIndex, const Node<SPACE_DIM>* pNode)
00136     {}
00137 public:
00138 
00142     AbstractFeAssemblerCommon();
00143 
00150     void SetCurrentSolution(Vec currentSolution);
00151 
00155     virtual ~AbstractFeAssemblerCommon()
00156     {
00157     }
00158 };
00159 
00160 template <unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM, bool CAN_ASSEMBLE_VECTOR, bool CAN_ASSEMBLE_MATRIX, InterpolationLevel INTERPOLATION_LEVEL>
00161 AbstractFeAssemblerCommon<ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL>::AbstractFeAssemblerCommon()
00162     : AbstractFeAssemblerInterface<CAN_ASSEMBLE_VECTOR,CAN_ASSEMBLE_MATRIX>()
00163 {
00164 }
00165 
00166 template <unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM, bool CAN_ASSEMBLE_VECTOR, bool CAN_ASSEMBLE_MATRIX, InterpolationLevel INTERPOLATION_LEVEL>
00167 void AbstractFeAssemblerCommon<ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL>::SetCurrentSolution(Vec currentSolution)
00168 {
00169     assert(currentSolution != NULL);
00170 
00171     // Replicate the current solution and store so can be used in AssembleOnElement
00172     HeartEventHandler::BeginEvent(HeartEventHandler::COMMUNICATION);
00173     mCurrentSolutionOrGuessReplicated.ReplicatePetscVector(currentSolution);
00174     HeartEventHandler::EndEvent(HeartEventHandler::COMMUNICATION);
00175 
00176     // The AssembleOnElement type methods will determine if a current solution or
00177     // current guess exists by looking at the size of the replicated vector, so
00178     // check the size is zero if there isn't a current solution.
00179     assert(mCurrentSolutionOrGuessReplicated.GetSize() > 0);
00180 }
00181 
00182 
00183 #endif /* ABSTRACTFEASSEMBLERCOMMON_HPP_ */