AbstractCellCycleModelOdeSolver.hpp

/*

Copyright (c) 2005-2012, University of Oxford.
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This file is part of Chaste.

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 * Redistributions in binary form must reproduce the above copyright notice,
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   software without specific prior written permission.

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*/

#ifndef ABSTRACTCELLCYCLEMODELODESOLVER_HPP_
#define ABSTRACTCELLCYCLEMODELODESOLVER_HPP_

#include "ChasteSerialization.hpp"
#include "ClassIsAbstract.hpp"
#include <boost/serialization/base_object.hpp>

#include <boost/shared_ptr.hpp>

#include "AbstractIvpOdeSolver.hpp"

class AbstractCellCycleModelOdeSolver
{
private:

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & mpOdeSolver;
        archive & mSizeOfOdeSystem;
    }

protected:

    boost::shared_ptr<AbstractIvpOdeSolver> mpOdeSolver;

    unsigned mSizeOfOdeSystem;

public:

    AbstractCellCycleModelOdeSolver();

    virtual ~AbstractCellCycleModelOdeSolver();

    virtual bool IsSetUp()=0;

    virtual void Reset();

    void SolveAndUpdateStateVariable(AbstractOdeSystem* pAbstractOdeSystem,
                                     double startTime,
                                     double endTime,
                                     double timeStep);

    virtual void Initialise()=0;

    bool StoppingEventOccurred();

    double GetStoppingTime();

    void SetSizeOfOdeSystem(unsigned sizeOfOdeSystem);

    unsigned GetSizeOfOdeSystem();

    void CheckForStoppingEvents();

    void SetMaxSteps(long int numSteps);

    void SetTolerances(double relTol=1e-4, double absTol=1e-6);

    virtual bool IsAdaptive();
};

#endif /*ABSTRACTCELLCYCLEMODELODESOLVER_HPP_*/