TargetedCellKiller.cpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #include "TargetedCellKiller.hpp"
00029 
00030 template<unsigned DIM>
00031 TargetedCellKiller<DIM>::TargetedCellKiller(AbstractCellPopulation<DIM>* pCellPopulation, unsigned targetedIndex, bool bloodLust)
00032 : AbstractCellKiller<DIM>(pCellPopulation),
00033   mTargetIndex(targetedIndex),
00034   mBloodLust(bloodLust)
00035 {
00036 }
00037 
00038 template<unsigned DIM>
00039 unsigned TargetedCellKiller<DIM>::GetTargetIndex() const
00040 {
00041     return mTargetIndex;
00042 }
00043 
00044 template<unsigned DIM>
00045 unsigned TargetedCellKiller<DIM>::GetBloodLust() const
00046 {
00047     return mBloodLust;
00048 }
00049 
00050 template<unsigned DIM>
00051 void TargetedCellKiller<DIM>::TestAndLabelCellsForApoptosisOrDeath()
00052 {
00053     if ( !mBloodLust || this->mpCellPopulation->GetNumRealCells()==0 || this->mpCellPopulation->GetNumRealCells()<mTargetIndex+1)
00054     {
00055         return;
00056     }
00057     this->mpCellPopulation->GetCellUsingLocationIndex(mTargetIndex)->Kill();
00058     mBloodLust = false;
00059 }
00060 
00061 template<unsigned DIM>
00062 void TargetedCellKiller<DIM>::OutputCellKillerParameters(out_stream& rParamsFile)
00063 {
00064     *rParamsFile << "\t\t\t<TargetIndex>" << mTargetIndex << "</TargetIndex> \n";
00065     *rParamsFile << "\t\t\t<BloodLust>" << mBloodLust << "</BloodLust> \n";
00066 
00067     // Call method on direct parent class
00068     AbstractCellKiller<DIM>::OutputCellKillerParameters(rParamsFile);
00069 }
00070 
00072 // Explicit instantiation
00074 
00075 template class TargetedCellKiller<1>;
00076 template class TargetedCellKiller<2>;
00077 template class TargetedCellKiller<3>;
00078 
00079 // Serialization for Boost >= 1.36
00080 #include "SerializationExportWrapperForCpp.hpp"
00081 EXPORT_TEMPLATE_CLASS_SAME_DIMS(TargetedCellKiller)

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