StochasticWntCellCycleModel.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #ifndef STOCHASTICWNTCELLCYCLEMODEL_HPP_
00029 #define STOCHASTICWNTCELLCYCLEMODEL_HPP_
00030 
00031 #include "ChasteSerialization.hpp"
00032 #include <boost/serialization/base_object.hpp>
00033 
00034 #include "WntCellCycleModel.hpp"
00035 #include "RandomNumberGenerator.hpp"
00036 
00043 class StochasticWntCellCycleModel : public WntCellCycleModel
00044 {
00045 private:
00046 
00048     friend class boost::serialization::access;
00061     template<class Archive>
00062     void serialize(Archive & archive, const unsigned int version)
00063     {
00064         archive & boost::serialization::base_object<WntCellCycleModel>(*this);
00065 
00066         RandomNumberGenerator* p_gen = RandomNumberGenerator::Instance();
00067         archive & *p_gen;
00068         archive & p_gen;
00069 
00070         archive & mStochasticG2Duration;
00071     }
00072 
00074     double mStochasticG2Duration;
00075 
00085     void GenerateStochasticG2Duration();
00086 
00087 public:
00088 
00094     StochasticWntCellCycleModel(boost::shared_ptr<AbstractCellCycleModelOdeSolver> pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>());
00095 
00100     AbstractCellCycleModel* CreateCellCycleModel();
00101 
00105     void InitialiseDaughterCell();
00106 
00114     void Initialise();
00115 
00120     void ResetForDivision();
00121 
00125     double GetG2Duration();
00126 
00132     virtual void OutputCellCycleModelParameters(out_stream& rParamsFile);
00133 };
00134 
00135 // Declare identifier for the serializer
00136 #include "SerializationExportWrapper.hpp"
00137 CHASTE_CLASS_EXPORT(StochasticWntCellCycleModel)
00138 #include "CellCycleModelOdeSolverExportWrapper.hpp"
00139 EXPORT_CELL_CYCLE_MODEL_ODE_SOLVER(StochasticWntCellCycleModel)
00140 
00141 #endif /*STOCHASTICWNTCELLCYCLEMODEL_HPP_*/

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