RadialSloughingCellKiller.cpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #include "RadialSloughingCellKiller.hpp"
00029 #include "AbstractCentreBasedCellPopulation.hpp"
00030 
00031 RadialSloughingCellKiller::RadialSloughingCellKiller(AbstractCellPopulation<2>* pCellPopulation, c_vector<double,2> centre, double radius)
00032     : AbstractCellKiller<2>(pCellPopulation),
00033       mCentre(centre),
00034       mRadius(radius)
00035 {
00036 }
00037 
00038 c_vector<double,2> RadialSloughingCellKiller::GetCentre() const
00039 {
00040     return mCentre;
00041 }
00042 
00043 double RadialSloughingCellKiller::GetRadius() const
00044 {
00045     return mRadius;
00046 }
00047 
00048 void RadialSloughingCellKiller::TestAndLabelCellsForApoptosisOrDeath()
00049 {
00050     for (AbstractCellPopulation<2>::Iterator cell_iter = this->mpCellPopulation->Begin();
00051          cell_iter != this->mpCellPopulation->End();
00052          ++cell_iter)
00053     {
00054         // Get distance from centre of cell population
00055         double r = norm_2(this->mpCellPopulation->GetLocationOfCellCentre(*cell_iter) - mCentre);
00056 
00057         if (r > mRadius)
00058         {
00059             cell_iter->Kill();
00060         }
00061     }
00062 }
00063 
00064 void RadialSloughingCellKiller::OutputCellKillerParameters(out_stream& rParamsFile)
00065 {
00066     *rParamsFile << "\t\t\t<xCentre>" << mCentre[0] << "</xCentre> \n";
00067     *rParamsFile << "\t\t\t<yCentre>" << mCentre[1] << "</yCentre> \n";
00068     *rParamsFile << "\t\t\t<mRadius>" << mRadius << "</mRadius> \n";
00069 
00070     // Call method on direct parent class
00071     AbstractCellKiller<2>::OutputCellKillerParameters(rParamsFile);
00072 }
00073 
00074 // Serialization for Boost >= 1.36
00075 #include "SerializationExportWrapperForCpp.hpp"
00076 CHASTE_CLASS_EXPORT(RadialSloughingCellKiller)

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