OxygenBasedCellKiller.cpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #include "OxygenBasedCellKiller.hpp"
00029 #include "ApoptoticCellProperty.hpp"
00030 
00031 template<unsigned SPACE_DIM>
00032 OxygenBasedCellKiller<SPACE_DIM>::OxygenBasedCellKiller(AbstractCellPopulation<SPACE_DIM>* pCellPopulation)
00033     : AbstractCellKiller<SPACE_DIM>(pCellPopulation)
00034 {
00035 }
00036 
00037 template<unsigned SPACE_DIM>
00038 void OxygenBasedCellKiller<SPACE_DIM>::TestAndLabelSingleCellForApoptosis(CellPtr pCell)
00039 {
00040     if (pCell->HasCellProperty<ApoptoticCellProperty>() && !(pCell->HasApoptosisBegun()))
00041     {
00042         pCell->StartApoptosis();
00043     }
00044 }
00045 
00046 template<unsigned SPACE_DIM>
00047 void OxygenBasedCellKiller<SPACE_DIM>::TestAndLabelCellsForApoptosisOrDeath()
00048 {
00049     for (typename AbstractCellPopulation<SPACE_DIM>::Iterator cell_iter = this->mpCellPopulation->Begin();
00050         cell_iter != this->mpCellPopulation->End();
00051         ++cell_iter)
00052     {
00053         TestAndLabelSingleCellForApoptosis(*cell_iter);
00054     }
00055 }
00056 
00057 template<unsigned DIM>
00058 void OxygenBasedCellKiller<DIM>::OutputCellKillerParameters(out_stream& rParamsFile)
00059 {
00060     // No parameters to output
00061 
00062     // Call method on direct parent class
00063     AbstractCellKiller<DIM>::OutputCellKillerParameters(rParamsFile);
00064 }
00065 
00067 // Explicit instantiation
00069 
00070 template class OxygenBasedCellKiller<1>;
00071 template class OxygenBasedCellKiller<2>;
00072 template class OxygenBasedCellKiller<3>;
00073 
00074 
00075 // Serialization for Boost >= 1.36
00076 #include "SerializationExportWrapperForCpp.hpp"
00077 EXPORT_TEMPLATE_CLASS_SAME_DIMS(OxygenBasedCellKiller)

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