FixedDurationGenerationBasedCellCycleModel.cpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #include "FixedDurationGenerationBasedCellCycleModel.hpp"
00029 
00030 FixedDurationGenerationBasedCellCycleModel::FixedDurationGenerationBasedCellCycleModel()
00031 {
00032 }
00033 
00034 AbstractCellCycleModel* FixedDurationGenerationBasedCellCycleModel::CreateCellCycleModel()
00035 {
00036     // Create a new cell-cycle model
00037     FixedDurationGenerationBasedCellCycleModel* p_model = new FixedDurationGenerationBasedCellCycleModel();
00038 
00039     /*
00040      * Set each member variable of the new cell-cycle model that inherits
00041      * its value from the parent.
00042      * 
00043      * Note 1: some of the new cell-cycle model's member variables (namely
00044      * mBirthTime, mCurrentCellCyclePhase, mReadyToDivide) will already have been
00045      * correctly initialized in its constructor.
00046      * 
00047      * Note 2: one or more of the new cell-cycle model's member variables
00048      * may be set/overwritten as soon as InitialiseDaughterCell() is called on
00049      * the new cell-cycle model.
00050      * 
00051      * Note 3: the member variable mDimension remains unset, since this cell-cycle
00052      * model does not need to know the spatial dimension, so if we were to call
00053      * SetDimension() on the new cell-cycle model an exception would be triggered;
00054      * hence we do not set this member variable.
00055      */
00056     p_model->SetBirthTime(mBirthTime);
00057     p_model->SetCellProliferativeType(mCellProliferativeType);
00058     p_model->SetMinimumGapDuration(mMinimumGapDuration);
00059     p_model->SetStemCellG1Duration(mStemCellG1Duration);
00060     p_model->SetTransitCellG1Duration(mTransitCellG1Duration);
00061     p_model->SetSDuration(mSDuration);
00062     p_model->SetG2Duration(mG2Duration);
00063     p_model->SetMDuration(mMDuration);
00064     p_model->SetGeneration(mGeneration);
00065     p_model->SetMaxTransitGenerations(mMaxTransitGenerations);
00066 
00067     return p_model;
00068 }
00069 
00070 void FixedDurationGenerationBasedCellCycleModel::OutputCellCycleModelParameters(out_stream& rParamsFile)
00071 {
00072     // No new parameters to output
00073 
00074     // Call method on direct parent class
00075     AbstractSimpleGenerationBasedCellCycleModel::OutputCellCycleModelParameters(rParamsFile);
00076 }
00077 
00078 // Serialization for Boost >= 1.36
00079 #include "SerializationExportWrapperForCpp.hpp"
00080 CHASTE_CLASS_EXPORT(FixedDurationGenerationBasedCellCycleModel)

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