CellwiseData.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #ifndef CELLWISEDATA_HPP_
00029 #define CELLWISEDATA_HPP_
00030 
00031 #include "ChasteSerialization.hpp"
00032 #include <boost/serialization/vector.hpp>
00033 
00034 #include "MeshBasedCellPopulation.hpp"
00035 
00036 
00042 template<unsigned DIM>
00043 class CellwiseData
00044 {
00045     friend class TestCellwiseData;
00046 
00047 private:
00048 
00050     static CellwiseData* mpInstance;
00051 
00053     AbstractCellPopulation<DIM>* mpCellPopulation;
00054 
00056     bool mAllocatedMemory;
00057 
00059     unsigned mNumberOfVariables;
00060 
00062     std::vector<double> mData;
00063 
00065     std::vector<double> mConstantDataForTesting;
00066 
00068     bool mUseConstantDataForTesting;
00069 
00071     friend class boost::serialization::access;
00078     template<class Archive>
00079     void serialize(Archive & archive, const unsigned int version)
00080     {
00081         archive & mpCellPopulation;
00082         archive & mAllocatedMemory;
00083         archive & mNumberOfVariables;
00084         archive & mData;
00085         archive & mConstantDataForTesting;
00086         archive & mUseConstantDataForTesting;
00087     }
00088 
00089 protected:
00090 
00094     CellwiseData();
00095 
00096 public:
00097 
00101     static CellwiseData* Instance();
00102 
00106     virtual ~CellwiseData();
00107 
00112     static void Destroy();
00113 
00122     double GetValue(CellPtr pCell, unsigned variableNumber=0);
00123 
00131     void SetValue(double value, unsigned locationIndex, unsigned variableNumber=0);
00132 
00138     void SetCellPopulation(AbstractCellPopulation<DIM>* pCellPopulation);
00139 
00143     AbstractCellPopulation<DIM>& rGetCellPopulation();
00144 
00152     void SetNumCellsAndVars(unsigned numCells, unsigned numVars);
00153 
00159     void SetConstantDataForTesting(std::vector<double>& rValues);
00160 
00164     bool IsSetUp();
00165 
00170     void ReallocateMemory();
00171 
00175     unsigned GetNumVariables();
00176 };
00177 
00178 #endif /*CELLWISEDATA_HPP_*/

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