AbstractCardiacCellWithModifiers.cpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 
00029 #include "AbstractCardiacCellWithModifiers.hpp"
00030 #include "Modifiers.hpp"
00031 
00032 template<class CARDIAC_CELL>
00033 void AbstractCardiacCellWithModifiers<CARDIAC_CELL>::AddModifier(std::string modifierName, boost::shared_ptr<AbstractModifier>& pModifier)
00034 {
00035     mModifiersMap[modifierName] = &pModifier;
00036     pModifier = boost::shared_ptr<AbstractModifier>(new DummyModifier()); // This modifier always returns what is passed in.
00037 }
00038 
00039 template<class CARDIAC_CELL>
00040 AbstractCardiacCellWithModifiers<CARDIAC_CELL>::AbstractCardiacCellWithModifiers(boost::shared_ptr<AbstractIvpOdeSolver> pOdeSolver,
00041                                  unsigned numberOfStateVariables,
00042                                  unsigned voltageIndex,
00043                                  boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus)
00044     : CARDIAC_CELL(pOdeSolver, numberOfStateVariables, voltageIndex, pIntracellularStimulus)
00045 {
00046     mModifiersMap.clear();
00047 }
00048 
00049 template<class CARDIAC_CELL>
00050 boost::shared_ptr<AbstractModifier> AbstractCardiacCellWithModifiers<CARDIAC_CELL>::GetModifier(const std::string& rModifierName)
00051 {
00052     if (mModifiersMap.find(rModifierName) == mModifiersMap.end())
00053     {
00054         EXCEPTION("There is no modifier called " + rModifierName + " in this model.");
00055     }
00056     return *(mModifiersMap[rModifierName]);
00057 }
00058 
00059 template<class CARDIAC_CELL>
00060 bool AbstractCardiacCellWithModifiers<CARDIAC_CELL>::HasModifier(const std::string& rModifierName) const
00061 {
00062     if (mModifiersMap.find(rModifierName) == mModifiersMap.end())
00063     {
00064         return false;
00065     }
00066     else
00067     {
00068         return true;
00069     }
00070 }
00071 
00072 template<class CARDIAC_CELL>
00073 void AbstractCardiacCellWithModifiers<CARDIAC_CELL>::SetModifier(const std::string& rModifierName, boost::shared_ptr<AbstractModifier>& pNewModifier)
00074 {
00075     if (mModifiersMap.find(rModifierName) == mModifiersMap.end())
00076     {
00077         EXCEPTION("There is no modifier called " + rModifierName + " in this model.");
00078     }
00079     *(mModifiersMap[rModifierName]) = pNewModifier;
00080 }
00081 
00082 // Explicit Instantiation
00083 template class AbstractCardiacCellWithModifiers<AbstractCardiacCell>;
00084 #ifdef CHASTE_CVODE
00085 template class AbstractCardiacCellWithModifiers<AbstractCvodeCell>;
00086 #endif
00087 
00088 

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