FakeBathCell.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #ifndef FAKEBATHCELL_HPP_
00029 #define FAKEBATHCELL_HPP_
00030 
00031 #include "ChasteSerialization.hpp"
00032 #include <boost/serialization/base_object.hpp>
00033 
00034 #include "AbstractCardiacCell.hpp"
00035 #include "AbstractStimulusFunction.hpp"
00036 #include <vector>
00037 
00045 class FakeBathCell : public AbstractCardiacCell
00046 {
00047 private:
00049     friend class boost::serialization::access;
00056     template<class Archive>
00057     void serialize(Archive & archive, const unsigned int version)
00058     {
00059         archive & boost::serialization::base_object<AbstractCardiacCell>(*this);
00060         // In case we're loading an old archive, update mNumberOfStateVariables
00061         this->mNumberOfStateVariables = 1;
00062     }
00063 
00064 public:
00071     FakeBathCell(boost::shared_ptr<AbstractIvpOdeSolver> pSolver,
00072                  boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus);
00073 
00077     ~FakeBathCell();
00078 
00087     void EvaluateYDerivatives(double time, const std::vector<double> &rY, std::vector<double> &rDY);
00088 
00094     double GetIIonic(const std::vector<double>* pStateVariables=NULL);
00095 
00102     void ComputeExceptVoltage(double tStart, double tEnd);
00103 };
00104 
00105 
00106 #include "SerializationExportWrapper.hpp"
00107 CHASTE_CLASS_EXPORT(FakeBathCell)
00108 
00109 namespace boost
00110 {
00111 namespace serialization
00112 {
00116 template<class Archive>
00117 inline void save_construct_data(
00118     Archive & ar, const FakeBathCell * t, const unsigned int file_version)
00119 {
00120     const boost::shared_ptr<AbstractIvpOdeSolver> p_solver = t->GetSolver();
00121     const boost::shared_ptr<AbstractStimulusFunction> p_stimulus = t->GetStimulusFunction();
00122     ar << p_solver;
00123     ar << p_stimulus;
00124 }
00125 
00130 template<class Archive>
00131 inline void load_construct_data(
00132     Archive & ar, FakeBathCell * t, const unsigned int file_version)
00133 {
00134 
00135     boost::shared_ptr<AbstractIvpOdeSolver> p_solver;
00136     boost::shared_ptr<AbstractStimulusFunction> p_stimulus;
00137     ar >> p_solver;
00138     ar >> p_stimulus;
00139     ::new(t)FakeBathCell(p_solver, p_stimulus);
00140 }
00141 }
00142 } // namespace ...
00143 
00144 
00145 #endif /*FAKEBATHCELL_HPP_*/

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