AbstractCardiacCellWithModifiers.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 
00029 #ifndef ABSTRACTCARDIACCELLWITHMODIFIERS_HPP_
00030 #define ABSTRACTCARDIACCELLWITHMODIFIERS_HPP_
00031 
00032 #include <boost/shared_ptr.hpp>
00033 #include <map>
00034 #include <string>
00035 
00036 // These come first to avoid compiler errors on Boost 1.33.1/PETSc 2.2
00037 #include "AbstractCvodeCell.hpp"
00038 #include "AbstractCardiacCell.hpp"
00039 
00040 #include "AbstractModifier.hpp"
00041 #include "AbstractIvpOdeSolver.hpp"
00042 #include "AbstractStimulusFunction.hpp"
00043 
00048 template<class CARDIAC_CELL>
00049 class AbstractCardiacCellWithModifiers : public CARDIAC_CELL
00050 {
00051 private:
00053     std::map<std::string, boost::shared_ptr<AbstractModifier>* > mModifiersMap;
00054 
00055 protected:
00062     void AddModifier(std::string modifierName, boost::shared_ptr<AbstractModifier>& pModifier);
00063 
00064 public:
00076     AbstractCardiacCellWithModifiers(boost::shared_ptr<AbstractIvpOdeSolver> pOdeSolver,
00077                                      unsigned numberOfStateVariables,
00078                                      unsigned voltageIndex,
00079                                      boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus);
00080 
00087     boost::shared_ptr<AbstractModifier> GetModifier(const std::string& rModifierName);
00088 
00096     bool HasModifier(const std::string& rModifierName) const;
00097 
00104     void SetModifier(const std::string& rModifierName, boost::shared_ptr<AbstractModifier>& pNewModifier);
00105 
00106 };
00107 
00108 #endif // ABSTRACTCARDIACCELLWITHMODIFIERS_HPP_

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