AbstractCardiacCellFactory.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 
00029 
00030 #ifndef ABSTRACTCARDIACCELLFACTORY_HPP_
00031 #define ABSTRACTCARDIACCELLFACTORY_HPP_
00032 
00033 #include <boost/shared_ptr.hpp>
00034 
00035 #include "AbstractCardiacCell.hpp"
00036 #include "AbstractTetrahedralMesh.hpp"
00037 #include "AbstractIvpOdeSolver.hpp"
00038 #include "EulerIvpOdeSolver.hpp"
00039 #include "HeartGeometryInformation.hpp"
00040 #include "HeartRegionCodes.hpp"
00041 #include "ZeroStimulus.hpp"
00042 
00055 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
00056 class AbstractCardiacCellFactory
00057 {
00058 private:
00062     AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* mpMesh;
00063 
00068     HeartGeometryInformation<SPACE_DIM>* mpHeartGeometryInformation;
00069 
00070 protected:
00072     boost::shared_ptr<ZeroStimulus> mpZeroStimulus;
00074     boost::shared_ptr<AbstractIvpOdeSolver> mpSolver;
00075 
00076 public:
00086     virtual AbstractCardiacCell* CreateCardiacCellForNode(unsigned nodeIndex);
00087 
00093     virtual AbstractCardiacCell* CreateCardiacCellForTissueNode(unsigned nodeIndex)=0;
00094 
00103     virtual void FinaliseCellCreation(std::vector< AbstractCardiacCell* >* pCellsDistributed,
00104                                       unsigned lo, unsigned hi);
00105 
00110     virtual void FillInCellularTransmuralAreas();
00111 
00115     virtual unsigned GetNumberOfCells();
00116 
00122     AbstractCardiacCellFactory(boost::shared_ptr<AbstractIvpOdeSolver> pSolver = boost::shared_ptr<AbstractIvpOdeSolver>(new EulerIvpOdeSolver));
00126     virtual ~AbstractCardiacCellFactory();
00127 
00131     void SetMesh(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh);
00132 
00136     AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* GetMesh();
00137 
00143     void SetHeartGeometryInformation(HeartGeometryInformation<SPACE_DIM>* pHeartGeometryInformation);
00144 
00148     HeartGeometryInformation<SPACE_DIM>* GetHeartGeometryInformation();
00149 
00150 };
00151 
00152 #endif /*ABSTRACTCARDIACCELLFACTORY_HPP_*/
00153 

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