MonodomainProblem.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2010
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 
00029 
00030 #ifndef MONODOMAINPROBLEM_HPP_
00031 #define MONODOMAINPROBLEM_HPP_
00032 
00033 #include "ChasteSerialization.hpp"
00034 #include <boost/serialization/base_object.hpp>
00035 
00036 #include "AbstractCardiacProblem.hpp"
00037 #include "AbstractCardiacPde.hpp"
00038 #include "AbstractDynamicAssemblerMixin.hpp"
00039 #include "AbstractCardiacCellFactory.hpp"
00040 #include "MonodomainPde.hpp"
00041 
00042 
00046 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
00047 class MonodomainProblem : public AbstractCardiacProblem<ELEMENT_DIM, SPACE_DIM, 1>
00048 {
00050     friend class boost::serialization::access;
00057     template<class Archive>
00058     void serialize(Archive & archive, const unsigned int version)
00059     {
00060         archive & boost::serialization::base_object<AbstractCardiacProblem<ELEMENT_DIM, SPACE_DIM, 1> >(*this);
00061         archive & mpMonodomainPde;
00062     }
00063 
00064 protected:
00066     MonodomainPde<ELEMENT_DIM,SPACE_DIM>* mpMonodomainPde;
00067 
00068 public:
00070     AbstractCardiacPde<ELEMENT_DIM, SPACE_DIM>* CreateCardiacPde();
00071 
00073     AbstractDynamicAssemblerMixin<ELEMENT_DIM, SPACE_DIM, 1>* CreateAssembler();
00074 
00075 public:
00081     MonodomainProblem(AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>* pCellFactory);
00082 
00086     MonodomainProblem();
00087 
00091     ~MonodomainProblem();
00092 
00094     MonodomainPde<ELEMENT_DIM,SPACE_DIM> * GetMonodomainPde();
00095 
00101     void WriteInfo(double time);
00102 
00107     virtual void DefineWriterColumns(bool extending);
00108 
00116     virtual void WriteOneStep(double time, Vec voltageVec);
00117 
00118 };
00119 
00120 #include "SerializationExportWrapper.hpp" // Must be last
00121 EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 1, 1);
00122 EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 1, 2);
00123 EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 1, 3);
00124 EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 2, 2);
00125 EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 3, 3);
00126 
00127 #endif /*MONODOMAINPROBLEM_HPP_*/

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