Mirams2010WntOdeSystem.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2010
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #ifndef MIRAMS2010WNTODESYSTEM_HPP_
00029 #define MIRAMS2010WNTODESYSTEM_HPP_
00030 
00031 #include <cmath>
00032 #include <iostream>
00033 
00034 #include "AbstractOdeSystem.hpp"
00035 #include "AbstractCellMutationState.hpp"
00036 
00037 // Needed here to avoid serialization errors
00038 #include "ApcOneHitCellMutationState.hpp"
00039 #include "ApcTwoHitCellMutationState.hpp"
00040 #include "BetaCateninOneHitCellMutationState.hpp"
00041 #include "LabelledCellMutationState.hpp"
00042 #include "WildTypeCellMutationState.hpp"
00043 
00055 class Mirams2010WntOdeSystem : public AbstractOdeSystem
00056 {
00057 private:
00058 
00064     double mA;
00066     double mB;
00068     double mC;
00070     double mD;
00072     double mE;
00074     double mF;
00075 
00079     boost::shared_ptr<AbstractCellMutationState> mpMutationState;
00080 
00081 public:
00082 
00089     Mirams2010WntOdeSystem(double wntLevel=0.0, boost::shared_ptr<AbstractCellMutationState> pMutationState=boost::shared_ptr<AbstractCellMutationState>());
00090 
00094     ~Mirams2010WntOdeSystem();
00095 
00099     void Init();
00100 
00109     void SetMutationState(boost::shared_ptr<AbstractCellMutationState> pMutationState);
00110 
00116     boost::shared_ptr<AbstractCellMutationState> GetMutationState();
00117 
00128     void EvaluateYDerivatives(double time, const std::vector<double>& rY, std::vector<double>& rDY);
00129 
00130 };
00131 
00132 #endif /*MIRAMS2010WNTODESYSTEM_HPP_*/

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