FixedDurationGenerationBasedCellCycleModelCellsGenerator.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2009
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #ifndef FIXEDDURATIONGENERATIONBASEDCELLCYCLEMODELCELLSGENERATOR_HPP_
00029 #define FIXEDDURATIONGENERATIONBASEDCELLCYCLEMODELCELLSGENERATOR_HPP_
00030 
00031 #include "AbstractCellsGenerator.hpp"
00032 #include "FixedDurationGenerationBasedCellCycleModel.hpp"
00033 
00038 template<unsigned DIM>
00039 class FixedDurationGenerationBasedCellCycleModelCellsGenerator : public AbstractCellsGenerator<DIM>
00040 {
00041 public:
00042 
00046     AbstractCellCycleModel* CreateCellCycleModel();
00047 
00056     void GenerateBasic(std::vector<TissueCell>& rCells,
00057                        const unsigned numCells);
00058 
00066     void GenerateGivenLocationIndices(std::vector<TissueCell>& rCells,
00067                                       const std::vector<unsigned> locationIndices);
00068 
00072     double GetTypicalTransitCellCycleTime();
00073 
00077     double GetTypicalStemCellCycleTime();
00078 
00082     bool CellsCanDifferentiate();
00083 };
00084 
00085 
00086 #endif /*FIXEDDURATIONGENERATIONBASEDCELLCYCLEMODELCELLSGENERATOR_HPP_*/

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