CellwiseData.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2009
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #ifndef CELLWISEDATA_HPP_
00029 #define CELLWISEDATA_HPP_
00030 
00031 #include <climits> // work around boost bug
00032 #include <boost/serialization/access.hpp>
00033 #include <boost/serialization/vector.hpp>
00034 
00035 #include "MeshBasedTissue.hpp"
00036 
00037 
00043 template<unsigned DIM>
00044 class CellwiseData
00045 {
00046     friend class TestCellwiseData;
00047 
00048 private:
00049 
00051     static CellwiseData* mpInstance;
00052 
00054     MeshBasedTissue<DIM>* mpTissue;
00055 
00057     bool mAllocatedMemory;
00058 
00060     unsigned mNumberOfVariables;
00061 
00063     std::vector<double> mData;
00064 
00066     std::vector<double> mConstantDataForTesting;
00067 
00069     bool mUseConstantDataForTesting;
00070 
00072     friend class boost::serialization::access;
00079     template<class Archive>
00080     void serialize(Archive & archive, const unsigned int version)
00081     {
00082         archive & mpTissue;
00083         archive & mAllocatedMemory;
00084         archive & mNumberOfVariables;
00085         archive & mData;
00086         archive & mConstantDataForTesting;
00087         archive & mUseConstantDataForTesting;
00088     }
00089 
00090 protected:
00091 
00095     CellwiseData();
00096 
00097 public:
00098 
00102     static CellwiseData* Instance();
00103 
00107     virtual ~CellwiseData();
00108 
00113     static void Destroy();
00114 
00123     double GetValue(TissueCell* pCell, unsigned variableNumber=0);
00124 
00132     void SetValue(double value, Node<DIM>* pNode, unsigned variableNumber=0);
00133 
00139     void SetTissue(MeshBasedTissue<DIM>& rTissue);
00140 
00144     MeshBasedTissue<DIM>& rGetTissue();
00145 
00153     void SetNumNodesAndVars(unsigned numNodes, unsigned numVars);
00154 
00160     void SetConstantDataForTesting(std::vector<double> values);
00161 
00165     bool IsSetUp();
00166 
00171     void ReallocateMemory();
00172 
00173 };
00174 
00175 #endif /*CELLWISEDATA_HPP_*/

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