Mahajan2008OdeSystem.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2009
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 
00029 #ifndef _MAHAJAN2008ODESYSTEM_
00030 #define _MAHAJAN2008ODESYSTEM_
00031 
00032 #include <cmath>
00033 #include <cassert>
00034 #include "AbstractCardiacCell.hpp"
00035 #include "Exception.hpp"
00036 #include "OdeSystemInformation.hpp"
00037 #include "AbstractStimulusFunction.hpp"
00038 
00042 class Mahajan2008OdeSystem : public AbstractCardiacCell
00043 {
00044 private:
00046     double mScaleFactorGks;
00048     double mScaleFactorIto;
00050     double mScaleFactorGkr;
00051 public:
00058     Mahajan2008OdeSystem(boost::shared_ptr<AbstractIvpOdeSolver> pSolver,
00059                          boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus);
00060                          
00064     ~Mahajan2008OdeSystem();
00065 
00069     void VerifyGatingVariables();
00070 
00075     void SetScaleFactorGks(double sfgks);
00076 
00081     void SetScaleFactorIto(double sfito);
00082 
00087     void SetScaleFactorGkr(double sfgkr);
00088 
00094     double GetIIonic();
00095 
00103     void EvaluateYDerivatives(double var_Environment__time, const std::vector<double> &rY, std::vector<double> &rDY);
00104 
00105 };
00106 
00107 
00108 #endif

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