CryptStatistics.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2009
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #ifndef CRYPTSTATISTICS_HPP_
00029 #define CRYPTSTATISTICS_HPP_
00030 
00031 #include "AbstractCryptStatistics.hpp"
00032 
00036 class CryptStatistics : public AbstractCryptStatistics
00037 {
00038 
00039 protected:
00040 
00054     bool CellIsInSection(double xBottom, double xTop, double yTop, const c_vector<double,2>& rCellPosition, double widthOfSection=0.5);
00055 
00070     bool CellIsInSectionPeriodic(double xBottom, double xTop, double yTop, const c_vector<double,2>& rCellPosition, double widthOfSection=1.0);
00071 
00072 
00073 public :
00074 
00080     CryptStatistics(MeshBasedTissue<2>& rCrypt)
00081         : AbstractCryptStatistics(rCrypt) {};
00082 
00086      virtual ~CryptStatistics() {};
00087 
00108      std::vector<TissueCell*> GetCryptSection(double xBottom = DBL_MAX, //RandomNumberGenerator::Instance()->ranf()*TissueConfig::Instance()->GetCryptWidth(),
00109                                               double xTop = DBL_MAX, //RandomNumberGenerator::Instance()->ranf()*TissueConfig::Instance()->GetCryptWidth(),
00110                                               double yTop = TissueConfig::Instance()->GetCryptLength() + 2.0,
00111                                               bool periodic = false);
00112 
00113 
00114 
00133     std::vector<TissueCell*> GetCryptSectionPeriodic(double xBottom = DBL_MAX, //RandomNumberGenerator::Instance()->ranf()*TissueConfig::Instance()->GetCryptWidth(),
00134                                                      double xTop = DBL_MAX, //RandomNumberGenerator::Instance()->ranf()*TissueConfig::Instance()->GetCryptWidth(),
00135                                                      double yTop = TissueConfig::Instance()->GetCryptLength() + 2.0);
00136 
00137 };
00138 
00139 
00140 #endif /*CRYPTSTATISTICS_HPP_*/
00141 

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